SE3020001

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_138
  • Malus domestica
  • SE3020001
  • Mutator
  • MadM1
  • MDC017892.144:19871-20059
  • ATTTATATA
  • TATATAGAGAAATGCTAAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATT      ---        C     AAAATCTC       G  -      C  A      GTACCACTTCACAGTT      TAATTATCATGTCAACATTATA
   TATATA   GAGAAATG TAAGG        TTAAAGT GG ATTCTT AT GACTTT                TAATGT                      
   ||||||   |||||||| |||||        ||||||| || |||||| || ||||||                ||||||                      A
   ATATAT   CTCTTTAC ATTCC        AGTTTTA CC TGGGAG TA CTGAGA                ATAGTA                      
         TTA        T     CCGAATAT       A  A      A  C      ---------------A      AAATACAAAAACCATATTATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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