SE3020007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_144
  • Malus domestica
  • SE3020007
  • Mutator
  • MadM6
  • MDC013911.255:3458-4123
  • ATTAATTAG
  • ATTAATTAGACTTATTAAATGATTTCTCCTCTGAA

Secondary structure and sequence

TSD    TIR
5'



3'
          A A   A    A           C    -    TCATTTAGTCTCTTTTTACTCCATAGAATTGATTTTGTCTCGCTTTACCCCTAAAATTGTCACTTTTGTCTCATTTAGTTTTAATTCATCCAATTTTTGTCAATTTTGTCAAATAAATGTTAAATTAAAGAGTAGTGGGGATATTTTATTTTAACACCTCTTTGCCTCCAACTTGCTTGATAAAAAAATCCCAATTTCTTTTTTGATAACTCTAATACAGACCCCCTTCTGTCTATCTTGCAGATTGTGTGGAGTTGTAGATGCAGCTGTAAGGAAAAGCAAGTAATGGGTT
   ATTAATT G CTT TTAA TGATTTCTCCT TGAA ACTA                                                                                                                                                                                                                                                                                                    
   ||||||| | ||| |||| ||||||||||| |||| ||||                                                                                                                                                                                                                                                                                                    G
   TAATTAA C GAA AATT ACTAAAGGGGA GCTT AATG                                                                                                                                                                                                                                                                                                    
AAT       - A   C    A           A    T    GAAGAATTTAATCAAAATAGAGTGAAACAGGGGTATTTGACTGTAAAAGGTAGAGTAAGTTAGAGTTAAGTGGTATAAAAGCAGGTAGGCAACCTATTCGCAATTAACCTCCCATCATATCTGTCAAATAATAACTGTGTTGAAAAWMGGTGGTTGAACGGACGATTTCTTTAGGGTTAAGGTAAAACCTATTGAGATTAAGTTTGGGAGCAGACAGAGAGAACAACTAACTACGCATCGATATCAACGACGGCAATCTAAGTTAGTCATCGAACTTAATCTAAAACTTTAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End