SE3020011

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_148
  • Malus domestica
  • SE3020011
  • Mutator
  • MadM8
  • MDC022361.237:10232-10420
  • TTTCCCCTA
  • GGGTAATGCTAGGGAGACCAAAATTTTAAACCAAATTTACAAACCAAATGATGTAGTTGTTGATAATTAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTCCCCTAT                 C          AAC       A               A          ATT   TTATTACT       TGAT
          GGGTAATGCTAGGGAGA CAAAATTTTA   CAAATTT CAAACCAAATGATGT GTTGTTGATA   AGA        TAAGCGT    
          ||||||||||||||||| ||||||||||   ||||||| ||||||||||||||| ||||||||||   |||        |||||||     
          CTTATTACGATCTCTTT GTTTTAAAAT   GTTTAAA GTTTGGTTTACTACA CAGTGGTTAT   TCT        ATTCGTG    
 ATCCCCTTT                 A          ATA       C               -          ---   ------TT       TAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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