SE3020015

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_152
  • Malus domestica
  • SE3020015
  • Mutator
  • MadM11
  • MDC009739.134:2573-2738
  • TTTTACATA
  • AGGGGTGTGCTATCCACACACCTCTTTTTACTTCTCCCACACCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTACAT         C             C            C       CTTG       A  T  -  T    TTCTTCA
        AGGGGTGTG TATCCACACACCT TTTTTACTTCTC CACACCC    TTAATTT TG CC TT GATC       
        ||||||||| ||||||||||||| |||||||||||| |||||||    ||||||| || || || ||||       A
        TCCCTACAC ATAGGTGTGTGGG AAAAATGAAGAG GTGTGGG    AATTAAA GC GG AG CTAG       
ATACATTT         T             T            A       --AA       A  C  C  C    CCTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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