Plant MITE

SE3020019

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_156
Malus domestica
SE3020019
Mutator
MadM12
MDC019529.303:3310-3549
CATAGGGCA
GAACCAGGATCCTCTCCTGAGCAATTCCCTAGGGATCCTAGGGATCCCGCAATCATGTCCGTTCATCGTATATCGTGCGGTC

Secondary structure and sequence

TSD TIR

5'

3'

CATAGGGCA                       A                       C      A           CG              AGAAATCA  TAAAATTTAAATTTTAAAATTCA
         GAACCAGGATCCTCTCCTGAGCA TTCCCTAGGGATCCTAGGGATCC GCAATC TGTCCGTTCAT  TATATCGTGCGGTC        TT                       
         ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||  ||||||||||||||        ||                       A
         CTTGGTCCTAGGAGAGGACTCGT AAGGGATCCCTAGGATCCCTAGG TGTTAG ACAGGCAAGTA  ATATAGCACGCCAG        GC                       
ACGGGATAC                       -                       A      A           AA              --------  AAAAGCAATCCATGATAAATATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020019

CATAGGGCAGAACCAGGATCCTCTCCTGAGCAATTCCCTAGGGATCCTAGGGATCCCGCAATCATGTCCGTTCATCGTATATCGTGCGGTCAGAAATCATTTAAAATTTAAATTTTAAAATTCAAATATAAATAGTACCTAACGAAAACGGACCGCACGATATAAAATGAACGGACAAGATTGTAGGATCCCTAGGATCCCTAGGGAATGCTCAGGAGAGGATCCTGGTTCCATAGGGCA

Copy Cancel