SE3020020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_157
  • Malus domestica
  • SE3020020
  • Mutator
  • MadM14
  • MDC032450.8:2430-2914
  • TTTTAAAAT
  • TTTTAAAATGAGTACATTGTAGCTATGGTCTTTTAAYTTTAATTCAATTGGAGCAATGGTCCCTMAACTAAAAATCCATTACCATTGGTCCCTCAACTCATCAAAACGTG

Secondary structure and sequence

TSD    TIR
5'



3'
       AAT     C        T            Y       C                   M                 C          C            C   CAAA       CCTCAACTAA  A       ----C    AG   CTCAACTTTAATTCAACTGGAGAAATGGTCCCTTAACTTTAACCCAATTGTAGCAATGGTCATTCCAACGTAACTTGTTTTGACAAAAAT
 TTTTAA   GAGTA ATTGTAGC ATGGTCTTTTAA TTTAATT AATTGGAGCAATGGTCCCT AACTAAAAATCCATTAC ATTGGTCCCT AACTCATCAAAA GTG    TATGGTC          AA TTCATTA     CATT  TCC                                                                                          
 ||||||   ||||| |||||||| |||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |||    |||||||          || |||||||     ||||  |||                                                                                           
 AAAATT   CTCAT TAACATCG TGCTAGGGAGTT AAATTAG TTAACCTCGTTACCAGGGA TTGGTTTTTAGGTAATG TAACCAGGGA TTGAGTAGTTTT CAC    ATATCAG          TT AAGTAGT     AACA  TTT                                                                                          
T      -CT     T        T            G       T                   G                 A          A            A   ATCG       -TAAAAGTAG  A       TTTAA    GT   ATTCAATACAACCTTACTAGTAAATATGTTAATCCCAGTGAGTTGAGTAGTTTCACACATTAATACCAGTAAAAGCAGTTGATGCAGTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End