SE3020021

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_158
  • Malus domestica
  • SE3020021
  • Mutator
  • MadM10
  • MDC017925.194:7714-7952
  • TTTAACTCC
  • GGAGGCAGATTGTTTGTCCTCCTGTTATGGTGRCCTTCCCATCCTCTCKTATTTGTGTGGTCACGGTTAAGCCACGTCAACATTTTATATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAACTCC                                R               K                      C       A           GATTTTTTTTATAGAGATA
         GGAGGCAGATTGTTTGTCCTCCTGTTATGGTG CCTTCCCATCCTCTC TATTTGTGTGGTCACGGTTAAG CACGTCA CATTTTATATT                   
         |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||                   A
         CCTCCGTCTAACAGACGGGAGGACAATACCAC GGAAGGGTAGGGGAG ATAAACACGCCAGTGCTAATTC GTGCAGT GTAAAATATAA                   
CCTCAATTT                                G               G                      A       C           GGATAACAAAAAACAGAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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