SE3050023

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_160
  • Malus domestica
  • SE3050023
  • PIF/harbinger
  • MadP3
  • MDC037249.8:6882-7253
  • TTA
  • AGAGCATCTCTAAAGGAGATTCAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT         C          -       -   CAAAC  G AATAACGGTAACAAAAGACAGCATTAACGTTTTCCAACCGATGAGCCAAATCTGATGTGGCATGACATGGATTGACATCTCTCCCTCTTCCTGCCAATTTTTTTTAATTAATTGTTAAATGCTTTTTATTAATTTTTTATTGGTTTA
  AGAGCATCT TAAAGGAGAT TCAAATT GTC     TA C                                                                                                                                                   
  ||||||||| |||||||||| ||||||| |||     || |                                                                                                                                                    
  TCTTGTAGA GTTTCCTCTA AGTTTAA ATT     TG G                                                                                                                                                   
AT         A          C       A   -----  - ATTTTAATTTTAAACTTCCGAATACACCATGAAACCGTAGAAAATTTGAAAATGAGAGGTTGGCTATACAGTTTAAATTTGTATTTTATTATTAAGTATACATAAAAGAAACATAACCCTTACTTTTCTTTGTTTTCCTATTACGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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