Plant MITE

SE3020028

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_165
Malus domestica
SE3020028
Mutator
MadM17
MDC026973.13:2679-2867
TCAATGTAA
AGAGAAATGCTAAGGAGACTCT

Secondary structure and sequence

TSD TIR

5'

3'

TCAATGTA      A           C   CTTA      A    A            CC          A                ------   GT
        AGAGAA TGCTAAGGAGA TCT    AAAGTG AACT TCCATGGACTCT  ACCATCTCAT TTTTTGGCACAATGTT      CAT  
        |||||| ||||||||||| |||    |||||| |||| ||||||||||||  |||||||||| ||||||||||||||||      |||   
        TCTCTT ACGATTTCTCT AGA    TTTCAC TTGA AGGTACCTGAGA  TGGTGGAGTA AAAAACCGTGTTACAA      GTA  
TATGTAAC      C           A   -AAG      C    G            AA          C                AAGATT   AC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020028

TCAATGTAAGAGAAATGCTAAGGAGACTCTCTTAAAAGTGAAACTATCCATGGACTCTCCACCATCTCATATTTTTGGCACAATGTTCATGTCAATGTTAGAAAACATTGTGCCAAAAACATGAGGTGGTAAAGAGTCCATGGAGAGTTCCACTTTGAAAGAATCTCTTTAGCACTTCTCTCAATGTAT

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