Plant MITE

SE3020029

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_166
Malus domestica
SE3020029
Mutator
MadM10
MDC022506.207:133-371
AATACTAAA
GGACAAGGATTGTCTGCCCTCCTACTTCCGGTGCCCTTCCGTGCCCTCCTGTTTTGTGTGGTCACGGTTAAGCCACGTCAACATTTTATATTTGTTTTTTTAT

Secondary structure and sequence

TSD TIR

5'

3'

AATACTAAA                            C        T    -            T         C       C         A         --     --      AGAGAT
         GGACAAGGATTGTCTGCCCTCCTACTTC GGTGCCCT CCGT GCCCTCCTGTTT GTGTGGTCA GGTTAAG CACGTCAAC TTTTATATT  TGTTT  TTTTAT      
         |||||||||||||||||||||||||||| |||||||| |||| |||||||||||| ||||||||| ||||||| ||||||||| |||||||||  |||||  ||||||       
         CCTGTTCCTAACAGACGGGAGGGTGAAG CTACGGGA GGCA CGGGAGGACAAA CACACCAGT CCAATTC GTGCAGTTG AAAATATAA  ATAAG  AAAATA      
AAATCATAA                            C        -    A            -         A       A         C         TG     TA      GAATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020029

AATACTAAAGGACAAGGATTGTCTGCCCTCCTACTTCCGGTGCCCTTCCGTGCCCTCCTGTTTTGTGTGGTCACGGTTAAGCCACGTCAACATTTTATATTTGTTTTTTTATAGAGATAATAAGATAAAAATGAATAGTAATATAAAACGTTGACGTGACTTAACCATGACCACACAAACAGGAGGGCAACGGAGGGCATCCGAAGTGGGAGGGCAGACAATCCTTGTCCAATACTAAA

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