Plant MITE

SE3020033

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_170
Malus domestica
SE3020033
Mutator
MadM19
MDC003545.431:6988-7207
ATTTTAAAG
TTTAAAGGGATCAGGATCCTCTCCTAAGCTAAGGGTGAGGATCCTCCTTAGCAAGCCAATCAGACCGTTTAAATTTTATCCAATGACTACAAACAGAGA

Secondary structure and sequence

TSD TIR

5'

3'

AT       -                  A  C                   T  C    CA   A A             -        --AC     --------  --AG   GT
  TTTAAAG GGATCAGGATCCTCTCCT AG TAAGGGTGAGGATCCTCCT AG AAGC  ATC G CCGTTTAAATTTT ATCCAATG    TACAA        AC    AGA  
  ||||||| |||||||||||||||||| || ||||||||||||||||||| || ||||  ||| | ||||||||||||| ||||||||    |||||        ||    |||  R
  AAATTTT CCTAGTCCTAGGAGAGGA TC ATTCCCACTCCTAGGAGGA TC TTCG  TAG C GGTAAGTTTAAAA TAGGTTGC    ATGTT        TG    TCT  
 G       A                  C  C                   C  A    AG   C C             A        CCAA     AATAAWKT  AAAA   AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020033

ATTTTAAAGGGATCAGGATCCTCTCCTAAGCTAAGGGTGAGGATCCTCCTTAGCAAGCCAATCAGACCGTTTAAATTTTATCCAATGACTACAAACAGAGAGTRTATCTAAAAGTTKWAATAATTGTAAACCCGTTGGATAAAAATTTGAATGGCCCGATGAGCTTACTCAGGAGGATCCTCACCCTTACCTCAGGAGAGGATCCTGATCCATTTTAAAG

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