Plant MITE

SE3020039

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_176
Malus domestica
SE3020039
Mutator
MadM9
MDC007041.402:1437-1677
GTTTCCATG
CATGGAATGAGGATCTTTACTGGATCCTCTTTGTGAGGATTCTAGGGATTATCAAATCGTGTCTATTCATCGTATATCG

Secondary structure and sequence

TSD TIR

5'

3'

GTTTC      -----            AC                G      A      A             A  C           TGAGG    AAATTATTTTAAATATTTTTATTTAAAATT
     CATGGA     ATGAGGATCTTT  TGGATCCTCTTTGTGA GATTCT GGGATT TCAAATCGTGTCT TT ATCGTATATCG     TCAT                              
     ||||||     ||||||||||||  |||||||||||||||| |||||| |||||| ||||||||||||| || |||||||||||     ||||                               
     GTACCT     TACTCCTAGGAG  ACCTAGGAGAAACACT CTAAGA TCCTAG AGTTTAGCACAGG AA TAGCATGTAGT     TGCT                              
           TTGCT            -A                A      C      G             C  A           ----G    GGTAAAAAAGCAGTTTATGACAAGTGTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020039

GTTTCCATGGAATGAGGATCTTTACTGGATCCTCTTTGTGAGGATTCTAGGGATTATCAAATCGTGTCTATTCATCGTATATCGTGAGGTCATAAATTATTTTAAATATTTTTATTTAAAATTAAATGTGAACAGTATTTGACGAAAAAATGGTCGTGTGATGTACGATAAACGGACACGATTTGAGGATCCTCAGAATCATCACAAAGAGGATCCAAGAGGATCCTCATTCGTTTCCATG

Copy Cancel