SE3030040

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_177
  • Malus domestica
  • SE3030040
  • hAT
  • Madh2
  • MDC007097.411:1380-1576
  • CTAATACC
  • TAGAAGTGGCAAATCAACCCACTGGGTTGTTAATGGGTACCCGTTAAGACCCTTTTAATTTAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTAATACC    A                C                 C            T    A         ATCATTATATAAGGGTGAGATTA
        TAGA GTGGCAAATCAACCCA TGGGTTGTTAATGGGTA CCGTTAAGACCC TTTA TTTAATATC                       
        |||| |||||||||||||||| ||||||||||||||||| |||||||||||| |||| |||||||||                       G
        ATCT CACCGTTTAGTTGGGT ATCTAACAATTACCCAT GGTAATTCTGGG AAAT AAATTAAAG                       
CCATAATC    C                A                 A            T    C         TGGAATCTTGTAGTAGTAGTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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