SE3020041

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_178
  • Malus domestica
  • SE3020041
  • Mutator
  • MadM20
  • MDC003471.571:15047-15263
  • TGACACCAC
  • CACGGACCAGGATCCTCTCCTGAGCTAAGGATGAGGATCCTCCTCATCAAGTGATGTGGACCGTTTGATGAAAATTCAACGGTTACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
 TGACAC  C                                   C                          T                      TTATTATAACTTTA     A
       CA GGACCAGGATCCTCTCCTGAGCTAAGGATGAGGAT CTCCTCATCAAGTGATGTGGACCGTT GATGAAAATTCAACGGTTACAA              AAGGG 
       || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||              ||||| C
       GT CCTGGTCCTAGGAGAGGACTCGATTCCTACTCCTA GAGGAGTAGTTCACTACACCTGGCAA CTACTTTTAGGTTGCCAATGTT              TTCCC 
CACCACA  -                                   A                          R                      ------------TG     C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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