SE3020043

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_180
  • Malus domestica
  • SE3020043
  • Mutator
  • MadM4
  • MDC001555.524:992-1179
  • TAAGAAGTC
  • GGGTAATGCTAGGGAGACTAAATTTGTAGACAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAGAAGTC                                    -TTAC               TCACCAATAAGA   TGCACGTTCATCAATGTTT
         GGGTAATGCTAGGGAGACTAAATTTGTAGACAAAAT     AAACTAAATGATGTG            ATG                   
         ||||||||||||||||||||||||||||||||||||     |||||||||||||||            |||                   A
         CTCATTACGATCCCTCTGATTTAAACATCTGTTTTA     TTTGATTTACTGTAC            TCA                   
CTGAACAAT                                    TAACA               ----------TT   ACTACTGACCTAATAATAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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