Plant MITE

SE3020044

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_181
Malus domestica
SE3020044
Mutator
MadM23
MDC036221.10:1842-2085
GTAAAATGA
ATGGGAGCATTTTTGCTCACCACCATAAACTATGGTGTATACTCACCACACACCCAATCAATTGACACTTGTTATTTCACTTAATCTTGGTTAATTTTTTTCAAAATTGAA

Secondary structure and sequence

TSD TIR

5'

3'

GTAAAATG                             -           A       C   C C             T                C         TTT     AA      AAAT
        ATGGGAGCATTTTTGCTCACCACCATAAA CTATGGTGTAT CTCACCA ACA C AATCAATTGACAC TGTTATTTCACTTAAT TTGGTTAAT   TTTCA  ATTGAA    
        ||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| | ||||||||||||| |||||||||||||||| |||||||||   |||||  ||||||    T
        TGCCCTCGTAAAAACGAGTGGTGGTATTT GATGCCACATA GAGTGGT TGT G TTAGTTAACTGTG ACAGTAAAGTGAATTG GATCAATTG   AAAGT  TAATTT    
TAGTAAAA                             T           C       A   A A             C                A         ---     -G      ACAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020044

GTAAAATGATGGGAGCATTTTTGCTCACCACCATAAACTATGGTGTATACTCACCACACACCCAATCAATTGACACTTGTTATTTCACTTAATCTTGGTTAATTTTTTTCAAAATTGAAAAATTAACATTTAATGTGAAAGTTAACTAGAGTTAAGTGAAATGACACGTGTCAATTGATTAGATGTATGGTGAGCATACACCGTAGTTTTATGGTGGTGAGCAAAAATGCTCCCGTAAAATGAT

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