SE3020046

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_183
  • Malus domestica
  • SE3020046
  • Mutator
  • MadM11
  • MDC003690.328:351-516
  • TAGATATTT
  • AGATATTTGGGGTGTGATATCCACACACCTCTTTTTATTTCTCCCACACCTTTTTGGTTTTTGGCCGTCGGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
T        -        A    C                     C          --         G    CG    AGATGAA
 AGATATTT GGGGTGTG TATC ACACACCTCTTTTTATTTCTC CACACCTTTT  TGGTTTTTG CCGT  GATC       
 |||||||| |||||||| |||| ||||||||||||||||||||| ||||||||||  ||||||||| ||||  ||||       T
 TTTATAGA CCCCACAC ATAG TGTGTGGGGAAAAATGAAGAG GTGTGGGGAA  ATTAAAAAC GGCA  CTAG       
         T        G    A                     T          CA         A    -A    AAGAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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