Plant MITE

SE3020047

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_184
Malus domestica
SE3020047
Mutator
MadM4
MDC013324.171:16064-16249
TTTTAGTTA
GTTAGGGTAATGCTAGGGACTAAATTTGTAGACAAAATATTATAAACTAAATGACATGGAAGTTGATGATTGGATTATTAC

Secondary structure and sequence

TSD TIR

5'

3'

TTTTA TT      A       --                A    ATT             CA  GA G       --T     -----     - TTA
     G  AGGGTA TGCTAGG  GACTAAATTTGTAGAC AAAT   ATAAACTAAATGA  TG  A TTGATGA   TGGAT     TATTA C   
     |  |||||| |||||||  |||||||||||||||| ||||   |||||||||||||  ||  | |||||||   |||||     ||||| |    
     C  TCCCAT ATGATTC  CTGATTTAAACATCTG TTTA   TGTTTGATTTACT  AC  T GATTATT   ACCTG     ATAGT G   
ATTGA TT      G       TT                A    -AT             AC  AG -       CTT     TACAA     T CCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020047

TTTTAGTTAGGGTAATGCTAGGGACTAAATTTGTAGACAAAATATTATAAACTAAATGACATGGAAGTTGATGATTGGATTATTACTTAACCGTTGATAAACATGTCCATTCTTATTAGTGACACATCATTTAGTTTGTTAATTTAGTCTACAAATTTAGTCTTCTTAGTAGTACCCTTTCAGTTA

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