SE3020053

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_190
  • Malus domestica
  • SE3020053
  • Mutator
  • MadM28
  • MDC000166.234:47049-47602
  • TAAATTATT
  • GGCTTAAATGTCAAAATTGTCCTTGTGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAATTATT           C     T       T   ----------ATA   ATATGGCCAATTTAATCCCCGTGTTTTCGATTTGGCTAATTTAGTCATTGTGTTTGTCTATGTTAGCCAATTAAAGGCATTTCATTCAGTCTCTTTTAAAAAATTCATAAGAAAATTATAGAATTACCTTTTTTCTTCACAGAAAAATGAAAATTAATGAGAAATAACACATATAAGAGATAAAACTTCCAATCTGAAAAATGATTAACGTTGTGACATAGAAAAGAG
         GGCTTAAATGT AAAAT GTCCTTG GTT             GCC                                                                                                                                                                                                                                    
         ||||||||||| ||||| ||||||| |||             |||                                                                                                                                                                                                                                     
         CCGAATTTACA TTTTA CAGGGAT CAA             GTT                                                                                                                                                                                                                                    
TTATTAAAT           A     C       T   AAACAGCAACCCA   AAATCAGGTACACAAAAGTTAAACCAGTTAAACCAGGAACACAAAGAGAGGTAATCGGTTAAGTCCTGTAAAGTTAGATTAAAGGCACTTTTTTTAATATTTAATAATATTTGATTAAATGTTTTAATAATAAAATAAATTTTATAAATTTTTACTTTATTTTAAGTTTTAATTTTCTTTTTAATAAGAAGAGGGTTGAAGGGCTGGAGGAGGGATTGTAATGGGGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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