SE3020054

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_191
  • Malus domestica
  • SE3020054
  • Mutator
  • MadM20
  • MDC003471.571:15047-15263
  • GTGGTGTCA
  • TGGTGTCAGGACCAGGATCCTCTCCTGAGCTAAGGATGAGGATTCTCCTCATCAAGTGATGTGGACCGTTRGATGAAAATCCAACGGTTACAAACAAGGGGGTCCCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
G        -                                                              R         C            ------------AC     G
 TGGTGTCA GGACCAGGATCCTCTCCTGAGCTAAGGATGAGGATTCTCCTCATCAAGTGATGTGGACCGTT GATGAAAAT CAACGGTTACAA              AAGGG 
 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||              ||||| G
 ACTGTGGT CCTGGTCCTAGGAGAGGACTCGATTCCTACTCCTAGGAGGAGTAGTTCACTACACCTGGCAA CTACTTTTA GTTGCCAATGTT              TTCCC 
         G                                                              A         A            AATAATATTGAAAT     T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3