Plant MITE

SE3020055

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_192
Malus domestica
SE3020055
Mutator
MadM20
MDC004092.187:3466-3681
GTGGAAACA
GT

Secondary structure and sequence

TSD TIR

5'

3'

   GGAA  A                  A             C      CTC     TT    G                        A      -------------AC   AG
 GT    AC GGACCAGGATCCTCTCCT AGCTAAGGATGAG ATTCTC   ATCAA  GGTG GGGCCGTTGGATGAAAATCCAATG CTACAA               AGG  
 ||    || |||||||||||||||||| ||||||||||||| ||||||   |||||  |||| |||||||||||||||||||||||| ||||||               |||  G
 CA    TG CCTGGTTCTAGGAGAGGA TCGATTCCTACTC TAGGAG   TAGTT  TTAT CCCGGCAACCTACTTTTAGGTTGC GATGTT               TCC  
A  AAGG  -                  C             C      AAT     CC    A                        C      AATAATATTGAAATT   CT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020055

GTGGAAACAGGACCAGGATCCTCTCCTAAGCTAAGGATGAGCATTCTCCTCATCAATTGGTGGGGGCCGTTGGATGAAAATCCAATGACTACAAACAGGAGGTCCCTTTAAAGTTATAATAATTGTAGCCGTTGGATTTTCATCCAACGGCCCATATTCCTTGATTAAGAGGATCCTCATCCTTAGCTCAGGAGAGGATCTTGGTCCGTGGAAACA

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