Plant MITE

SE3020057

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_194
Malus domestica
SE3020057
Mutator
MadM12
MDC019529.303:3310-3549
TGCCCTATG
GGAACCAGGATCCTCTCCTGAGCATTCCCTAGGGATCCTAGGGATCCTACAATCTTGTCCGTTCATTTTATATCGTGCGGTCCGTTTTCGTTAGGTACTATTTATATTT

Secondary structure and sequence

TSD TIR

5'

3'

TGCCCTAT                        -                        A     T            T              C TTT     AGG  CT     T    GAAT
        GGAACCAGGATCCTCTCCTGAGCA TTCCCTAGGGATCCTAGGGATCCT CAATC TGTCCGTTCATT TATATCGTGCGGTC G   TCGTT   TA  ATTTA ATTT    
        |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| |   |||||   ||  ||||| ||||     
        TCTTGGTCCTAGGAGAGGACTCGT AAGGGATCCCTAGGATCCCTAGGG GTTAG ACAGGCAAGTAG ATATAGCACGCCAG C   AGTAA   AT  TAAAT TAAA    
GTATCCCG                        T                        C     T            C              T TTT     ---  TT     T    ATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020057

TGCCCTATGGAACCAGGATCCTCTCCTGAGCATTCCCTAGGGATCCTAGGGATCCTACAATCTTGTCCGTTCATTTTATATCGTGCGGTCCGTTTTCGTTAGGTACTATTTATATTTGAATTTTAAAATTTAAATTTTAAATGATTTCTGACCGCACGATATACGATGAACGGACATGATTGCGGGATCCCTAGGATCCCTAGGGAATTGCTCAGGAGAGGATCCTGGTTCTGCCCTATG

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