Plant MITE

SE3020058

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_195
Malus domestica
SE3020058
Mutator
MadM11
MDC004656.1355:369-532
TATCATTTG
GGGGTGTGCTATCCACACATCCCAAATTACTTCTCACACACTCCTTGTTAATTTCTGTCCGTTGATC

Secondary structure and sequence

TSD TIR

5'

3'

TATCATTT        C    C          AA              CT    G       C  T     -    TTCTTCA
        GGGGTGTG TATC ACACATCCCA  TTACTTCTCACACA  CCTT TTAATTT TG CCGTT GATC       
        |||||||| |||| ||||||||||  ||||||||||||||  |||| ||||||| || ||||| ||||       A
        CCCCACAC ATAG TGTGTGGGGT  AATGAAGAGTGTGT  GGAA GATTAAA GC GGCAG CTAG       
TTTACTAT        T    A          AA              --    A       A  T     T    CCTACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020058

TATCATTTGGGGTGTGCTATCCACACATCCCAAATTACTTCTCACACACTCCTTGTTAATTTCTGTCCGTTGATCTTCTTCAATTCATCCGATCTGACGGTCGAAAATTAGAAAGGTGTGTGAGAAGTAAAATGGGGTGTGTAGATATCACACCCCTATCATTT

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