SE3020060

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_197
  • Malus domestica
  • SE3020060
  • Mutator
  • MadM12
  • MDC000224.419:4019-4258
  • GCTAGTGAG
  • GCTAGTGAGGGAAAAGGATTCTCGCTAGATCTTTTTCTTGGGCATTCTAGAAATTTTGTGATTATGACCGTTCATCGTACATCGTGCGATCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
         GAG               C     -      C     C T     AA           A        C      C  C     A    --AAATCATTTCAAA     A    TAA
   GCTAGT   GGAAAAGGATTCTCG TAGAT CTTTTT TTGGG A TCTAG  ATTTTGTGATT TGACCGTT ATCGTA AT GTGCG TCAG               ATTTA ATTT   
   ||||||   ||||||||||||||| ||||| |||||| ||||| | |||||  ||||||||||| |||||||| |||||| || ||||| ||||               ||||| ||||   A
   TGATCG   CCTTTTCTTAGGAGC GTCTA GAAAAA AACCT T AGATT  TAAAGCATTAG ACTGGCAA TAGCAT TA CACGT AGTC               TAAAT TAAA   
GAG      ---               A     A      -     - T     CC           C        A      A  A     C    AAAAATAATCCATGA     A    TTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3