Plant MITE

SE3020061

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_198
Malus domestica
SE3020061
Mutator
MadM15
MDC001725.72:1248-1445
CATGAAACG
GGGAAAGGGATTCTCTCCGGATKCCTTCKACCAATTCCACCAATCCGGACTCTTGAAATTTGATCAAACG

Secondary structure and sequence

TSD TIR

5'

3'

CATGAAAC                 C  ATK     K     TTC        C  -                 A    ACTAAAAACA  GCCCCRTTTAAA
        GGGAAAGGGATTCTCTC GG   CCTTC ACCAA   CACCAATC GG ACTCTTGAAATTTGATC AACG          GG            
        ||||||||||||||||| ||   ||||| |||||   |||||||| || ||||||||||||||||| ||||          ||            A
        CCCTTTCCCTAGGAGAG CC   GGAAG TGGTT   GTGGTTAG TC TGGGAATTTTAAACTAG TTGC          TT            
GCAAAGTA                 A  AAG     G     TAY        -  R                 M    -------CYA  TCAATAATATTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020061

CATGAAACGGGAAAGGGATTCTCTCCGGATKCCTTCKACCAATTCCACCAATCCGGACTCTTGAAATTTGATCAAACGACTAAAAACAGGGCCCCRTTTAAAAGTTATAATAACTTTAYCCGTTMGATCAAATTTTAAGGGTRCTGATTGGTGYATTTGGTGGAAGGGAACCAGAGAGGATCCCTTTCCCATGAAACG

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