Plant MITE

SE3030063

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_200
Malus domestica
SE3030063
hAT
Madh5
MDC001320.530:3223-3891
AATATAAC
TATAACCTATGATGCA

Secondary structure and sequence

TSD TIR

5'

3'

AA    AC          CAAACAC   ACATCGGCCKRGTATWGCGTGTCGGATACGCAAATGGACACGATACGCCTCTGATACGGTCGGATACACGTTGGATACGTATATGGATCAACGGACGACGTTTGACAGATGTGTATGAGTATCCGACGGTTTAGATACGGGTATCCGACTATCTGGATACGGATATCTGCACCATGGCCTTTACCTCATGATGGAGATGATGCAATATGGTGGAAGGACGCCTCACGAAGAAGATGACGCAATTTGATGGAGGAAGGCGTCGCACGGAGACGACCCGATCTAGTGGAGGAGGCTTTGCGAAGAAGATG
  TATA  CTATGATGCA       GGC                                                                                                                                                                                                                                                                                                                    
  ||||  ||||||||||       |||                                                                                                                                                                                                                                                                                                                    A
  ATAT  GATACTACGT       TGT                                                                                                                                                                                                                                                                                                                    
CA    AA          ----ACC   ACCTATGCCTGTGCTCCTATTCTGTGCTATGCTATACCCCTATGCAGTTTAAAGATTTTTGATTCTGTGCTATGCTGTTAAATATATTATTTATATATAAATTTTTTATATAAAATTTATTGTTATTTTTAAATTAATGAGTTTTAAATTAAATATAATAAGTTTTGAGTTTTTCTTTCCTACCATCACCACCTTTAAACCACCCGATACATCAAAACCCGAAATCAGAGTAAATTTGGGATTTTTTTGTTTTTGACACCACAGCAAAAAATGATGTCTTTGTTTGTTTGCCGTACAGCTGGATCGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3030063

AATATAACCTATGATGCACAAACACGGCACATCGGCCKRGTATWGCGTGTCGGATACGCAAATGGACACGATACGCCTCTGATACGGTCGGATACACGTTGGATACGTATATGGATCAACGGACGACGTTTGACAGATGTGTATGAGTATCCGACGGTTTAGATACGGGTATCCGACTATCTGGATACGGATATCTGCACCATGGCCTTTACCTCATGATGGAGATGATGCAATATGGTGGAAGGACGCCTCACGAAGAAGATGACGCAATTTGATGGAGGAAGGCGTCGCACGGAGACGACCCGATCTAGTGGAGGAGGCTTTGCGAAGAAGATGATTGCTAGGTCGACATGCCGTTTGTTTGTTTCTGTAGTAAAAAACGACACCACAGTTTTTGTTTTTTTAGGGTTTAAATGAGACTAAAGCCCAAAACTACATAGCCCACCAAATTTCCACCACTACCATCCTTTCTTTTTGAGTTTTGAATAATATAAATTAAATTTTGAGTAATTAAATTTTTATTGTTATTTAAAATATATTTTTTAAATATATATTTATTATATAAATTGTCGTATCGTGTCTTAGTTTTTAGAAATTTGACGTATCCCCATATCGTATCGTGTCTTATCCTCGTGTCCGTATCCATGTCCATGCATCATAGAATATAAC

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