SE3030064

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_201
  • Malus domestica
  • SE3030064
  • hAT
  • Madh6
  • MDC013475.307:422-1167
  • AGTACCAG
  • GTACCAGCACTGGCGGATCCATGT

Secondary structure and sequence

TSD    TIR
5'



3'
  A    -   CAC           T  -    A -- C ------  G    C    ACC      AAGTCTGAAGAAACACTTGTGATCGACCTTCCGGACCCTCCAACAATATGGGCAGGTGCAGTGGAGAGGCTTGTTGTCTCCATGGATATGCAGGCAGCAGTGCTTGACAACGAAGAAGATGAGGTTTTTAATTTTTGTTTTAAAAGACCTAGCCAAAAAGATAACGTTTTTTAGCTTGGTCATTATWAAAAAAWTWAAAACTAAAATATCTTTGTTTTCTCTACAGAGCCCGAGAACCCCGGTCTTTTCCAATATCCCCAAATTATATTTAAGAACTCTCAGCCCCAATCGTCGCAATTTTCCAACTTTAAACTCAA
   GTAC CAG   TGGCGGATCCA GT AGGG C  C A      GG GATC CGAG   CTTCGG                                                                                                                                                                                                                                                                                                                             
   |||| |||   ||||||||||| || |||| |  | |      || |||| ||||   ||||||                                                                                                                                                                                                                                                                                                                              
   CATG GTC   ACCGCCTAGGT CA AAGT T  A G      AG GGTT GTAT   TTTCGA                                                                                                                                                                                                                                                                                                                             
GAC    A   ---           C  A    - CT - CCTCCC  -    -    ---      GTTTATATATATATATATATATATATATATATATATATATAATCTGATTAACCCAAGGTTTAGTGATAAAAGATGACTTAAACCAAGTAACTTATTTAGTTCTAATTAGAGTTCCCATTATTTTGGTTGTTTAAAAGGAATCGTTGTGTTGCGTTAATCACTGAGATGTTTCTATTTTAAAAGATTACATTGTATATAGAATATTAACCCTCAACCCTGATCTCAGATCCTAATTTTTTGAAGATACTTAAACCTTCTTTAATTTAATCCGTCGATTTCCACCACCTTGCCGTTTACCACCACCCCTTATCTCATTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End