SE3040073

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_210
  • Malus domestica
  • SE3040073
  • CACTA
  • MadC1
  • MDC005200.174:3366-3735
  • TAA
  • ACACTATGTTTGGAAGAGGGAATTAAACTTGGAATTTGG

Secondary structure and sequence

TSD    TIR
5'



3'
TA  A           A         -  ----   T  -     G GTAA      - AT    T       CATRCACTAATTCCMTTGYT       -----------------------ATAAC      AATTTAGAATTTMTGCGTGRAAAAAAAACTTGAAATTTGGGACCTTCAATTCCCAAGTTTAAATTCMATGTAAAT
  AC CTATGTTTGGA GAGGGAATT AA    ACT GG AATTT G    AAGTGA G  TTTA AAATTGA                    TGGATTT                            CATAGA                                                                           
  || ||||||||||| ||||||||| ||    ||| || ||||| |    |||||| |  |||| |||||||                    |||||||                            ||||||                                                                           A
  TG GATACAAATCT TTTTTTTAA TT    TGA TC TTAAA T    TTTACT C  AGGT TTTAACT                    GCCTAAA                            AACAAA                                                                           
AA  G           A         A  CTAA   T  M     G ----      G CT    M       ---------------TTATT       ATAAAAGATYTTAAACACTTAAAAAAAA      TTGGATTTTGTTATTACCTTAAYTTAWRCTTTAAAAAAAAATTTGAGAKTTAGTATCTTTAACTCTTTACTATGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End