SE3020077

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_214
  • Malus domestica
  • SE3020077
  • Mutator
  • MadM11
  • MDC002935.165:2037-2179
  • AAAATATAG
  • GGGGTGTGCTATCCACACACCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAATATA        C              -------------------TTGA      A  T      -   TTCTTCA
        GGGGTGTG TATCCACACACCCC                       TAATTT TG CCGTTG ATC       
        |||||||| ||||||||||||||                       |||||| || |||||| |||       A
        CCCCACAC ATAGGTGTGTGGGG                       ATTAAA GC GGCAAC TAG       
ATATAAAA        T              TAAAATGAAGAGTGTGTAGAAAA      A  C      C   CCTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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