SE3050079

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_216
  • Malus domestica
  • SE3050079
  • PIF/harbinger
  • MadP6
  • MDC009443.230:1328-1613
  • TTA
  • AGGTACCGTTTGGTACGTGGGACGAGACGGGACGGAACGGGACGAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                  ----      A                   -   --------------------------------------C      TCCCACGTTTGGTGCGCCTAAAAARTGTGGAACGGGTTGTCCCATGGGACGAAATTTGGCTGATT
  AGGTACCGTTTGGTACGT    GGGACG GACGGGACGGAACGGGACG AGC                                       GTTCCG                                                                 
  ||||||||||||||||||    |||||| ||||||||||||||||||| |||                                       ||||||                                                                 T
  TCCATGGCAAACCATGCG    CCCTGC TTGTTCTGCCTTGTTCTGC TTG                                       AGTATT                                                                 
AT                  TCTG      C                   C   TCTACTACATTTATAACTTTTTCTATTCCTCTTTTAAAC      TTACAATATTTAAACACAAGGTGCRTACACCTTGCCCAGTAAGGTCCCTCTTCTCCACCTTGCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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