Plant MITE

SE3020081

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_218
Malus domestica
SE3020081
Mutator
MadM32
MDC007801.297:9629-9811
TATACAAGG
GGAATAATGCTAGGGAGACCAAATTTTTTAAACTAAATTTGCAAATCAAAT

Secondary structure and sequence

TSD TIR

5'

3'

    TATACAAG  AA              C    TT       C       G     C    -GAT    -T TTGATGATTGTATTATTACTTA
            GG  TAATGCTAGGGAGA CAAA  TTTTAAA TAAATTT CAAAT AAAT    GTAC  G                      
            ||  |||||||||||||| ||||  ||||||| ||||||| ||||| ||||    ||||  |                       
            CC  ATTACGATCCCTTT GTTT  AAAATTT GTTTAAA GTTTA TTTA    ACAG  G                      
CAGGAACATATA  --              A    -T       A       R     A    KTAC    TY TTATCCTTTGTTCGTGCAACTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020081

TATACAAGGGAATAATGCTAGGGAGACCAAATTTTTTAAACTAAATTTGCAAATCAAATGATGTACTGTTGATGATTGTATTATTACTTAATCAACGTGCTTGTTTCCTATTGYTGACACATKATTTAATTTGRAAATTTGATTTAAAATTTTGATTTCCCTAGCATTACCATATACAAGGAC

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