Plant MITE

SE3020084

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_221
Malus domestica
SE3020084
Mutator
MadM8
MDC022802.44:2246-2421
GATCATTAA
GATC

Secondary structure and sequence

TSD TIR

5'

3'

         ATTAA  A   C    A     C                  GA    TC     -------------------TA   --AA   GC    TAAT
     GATC     GG TAA GCTG GGAGA CAAATTTTTAAACCAAAT  TGTA  ACCAA                     GGA    TAA  AAGT    
     ||||     || ||| |||| ||||| ||||||||||||||||||  ||||  |||||                     |||    |||  ||||     
     CTAG     CC ATT CGAT CCTCT GTTTAAAAATTTGGTTTA  ACAT  TGGTT                     CCT    ATT  TTCA    
AATTA    -----  C   A    C     A                  AC    -T     TATTACACCAACCACTACTAA   AATA   AA    CAGR

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020084

GATCATTAAGGATAACGCTGAGGAGACCAAATTTTTAAACCAAATGATGTATCACCAATAGGAAATAAGCAAGTTAATRGACACTTAATTAATAATCCAATCATCACCAACCACATTATTTGGTTTACACAATTTGGTTTAAAAATTTGATCTCCCTAGCATTACCCGATCATTAA

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