Plant MITE

SE3020085

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_222
Malus domestica
SE3020085
Mutator
MadM20
MDC011191.241:8881-9097
CTTATGGAA
TTATGGAAGGATTTGGATCCTTTCCTGAGCTAATGGAGAGGATCCTTCTGACCAAACATTGTGGGCCGTTGAATTTTTATCCAACGACTA

Secondary structure and sequence

TSD TIR

5'

3'

 C      AA               C                               A               A                  CAAACAG  AGGTCCATTTA
  TTATGG  GGATTTGGATCCTTT CTGAGCTAATGGAGAGGATCCTTCTGACCAA CATTGTGGGCCGTTG ATTTTTATCCAACGACTA       GG           
  ||||||  ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||       ||           A
  GGTATT  CCTAAACCTAGGAGA GATTCGGTTACCTCTCCTAGGAGGATTGGTT GTAACACCCGGCAAC TAAAAGTAGGTTGCTGAT       TT           
AA      -C               A                               C               C                  ------A  AATAATATTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020085

CTTATGGAAGGATTTGGATCCTTTCCTGAGCTAATGGAGAGGATCCTTCTGACCAAACATTGTGGGCCGTTGAATTTTTATCCAACGACTACAAACAGGGAGGTCCATTTAAAGTTATAATAATTATAGTCGTTGGATGAAAATCCAACGGCCCACAATGCTTGGTTAGGAGGATCCTCTCCATTGGCTTAGAAGAGGATCCAAATCCCTTATGGAA

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