SE3020090

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_227
  • Malus domestica
  • SE3020090
  • Mutator
  • MadM11
  • MDC009464.426:6517-6680
  • TATATTATG
  • ATATTATGGGGTGTGATATCCACACATCCCTTTTTACTTCTCCCACACCTTTTTAGTTTTCGGCCGTCGGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
T   T   -        A                          C    -     -        C G    CG    GGATGAA
 ATA TAT GGGGTGTG TATCCACACATCCCTTTTTACTTCTC CACA CCTTT TTAGTTTT G CCGT  GATC       
 ||| ||| |||||||| |||||||||||||||||||||||||| |||| ||||| |||||||| | ||||  ||||       T
 TAT ATA CCCCACAC ATAGGTGTGTGGGGAAAAATGAAGAG GTGT GGAAA AATTAAAG C GGCA  CTAG       
    T   T        G                          T    C     C        A A    -A    AAGAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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