SE3020093

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_230
  • Malus domestica
  • SE3020093
  • Mutator
  • MadM36
  • MDC007579.341:1072-1259
  • TTTATTATT
  • TATTATTGAGTAATGTTAGGGAGACTCAATTTAGAAACTAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT  T  TT              A  C       A  A      -ATTAT        T      TCACC   A  AA   YCACATCTATCAACGC
  TA TA  GAGTAATGTTAGGG GA TCAATTT GA ACTAAA      AAACTAAA GATGTG     AGT GA  TGA                
  || ||  |||||||||||||| || ||||||| || ||||||      |||||||| ||||||     ||| ||  |||                 
  AT AT  CTCATTACGATCCC CT AGTTAAA CT TGATTT      TTTGATTT CTATAC     TCA CT  ACT                
TT  T  TT              A  A       C  C      AAAACC        C      ---TT   A  --   AACCAAATAATCAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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