SE3040094

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_231
  • Malus domestica
  • SE3040094
  • CACTA
  • MadC1
  • MDC042765.12:27743-28112
  • TAA
  • ACACTATGTTTGGATGAAGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                      ATAAACTTG   -- --     TAAAAGTCAGAATTTATAAATTGACATACATAAATTCTCTTGTTTGGATTCATAAACATAGAAATTTAGAATTTCCGCGTGGAAAAAAAAACTTGGAATTTGGGACCTCCAATTCCCAAATTCAAATTTGATGTAAATAGG
  ACACTATGTTTGGATGAAGGAA         AAA  T  TTTGG                                                                                                                                             
  ||||||||||||||||||||||         |||  |  |||||                                                                                                                                              
  TGTGATACAAACCTACTTCTTT         TGG  C  TAAAG                                                                                                                                             
AA                      AAATTCTAA   TT CT     TTTTACTGCCTTTAACTTTACTGTTCTAAAATAAAAGATCTTAAACATTTAAAAGAACAAACCAATTGGATTTTCTTGTTACCTTAACTTATGCCTTAAACAATAAAAAATTRAGAGTTAGTATTTTTAATCCTTTACTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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