Plant MITE

SE3020096

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_233
Malus domestica
SE3020096
Mutator
MadM24
MDC010295.131:21836-22061
AGAAAATGG
GGAAATGGATCCTCTCCGGATCCATTATGGGATCCTCACATCTCAACCGTTCATCGTGTATCGTTCGGTCAGAAATCATT

Secondary structure and sequence

TSD TIR

5'

3'

 AGAAAATG        A          A   A    ------------                 A                  T       AAA  A  TAACTTT       CAAAATT
         GGAAATGG TCCTCTCCGG TCC TTAT            GGGATCCTCACATCTCA CCGTTCATCGTGTATCGT CGGTCAG   TC TT       TATTATT       
         |||||||| |||||||||| ||| ||||            ||||||||||||||||| |||||||||||||||||| |||||||   || ||       |||||||        
         CCTTTACC AGGAGAGGCC AGG AATG            CTCTAGGGGTGTAGAGT GGCAAGTAGCATATAGCA GCTAGTC   AG AG       ATGATGA       
GTAAAAAGA        A          C   -    CATCGCTAGAAT                 C                  C       AAA  C  ----TCC       ACACAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020096

AGAAAATGGGAAATGGATCCTCTCCGGATCCATTATGGGATCCTCACATCTCAACCGTTCATCGTGTATCGTTCGGTCAGAAATCATTTAACTTTTATTATTCAAAATTAAACACAAGTAGTACCTGACGAAAACTGATCGCACGATATACGATGAACGGCTGAGATGTGGGGATCTCTAAGATCGCTACGTAAGGACCCGGAGAGGAACCATTTCCAGAAAAATG

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