SE3020097

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_234
  • Malus domestica
  • SE3020097
  • Mutator
  • MadM15
  • MDC007809.235:5537-5753
  • CCAATAACA
  • GGATTTGGATCCTCTCCGAGGCAACTGGTCGGGATCCTCCTGACCAATATTCGTGAACCGTTGGATTTTTATCCAACAGCTACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
CCAATAACA           C    C                             ATA      A                     A       ACAGGGG    CTC
         GGATTTGGATC TCTC GAGGCAACTGGTCGGGATCCTCCTGACCA   TTCGTG ACCGTTGGATTTTTATCCAAC GCTACAA       GACT   
         ||||||||||| |||| |||||||||||||||||||||||||||||   |||||| ||||||||||||||||||||| |||||||       ||||   T
         CCTAAACCTAG AGAG CTCCGTTGACTAGTCCTAGGAGGACTGGT   AAGCAC TGGCAACCTAAAAATAGGTTG CGATGTT       TTGA   
ACAATAACC           T    A                             CAC      C                     C       AATAATA    AAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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