SE3020098

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_235
  • Malus domestica
  • SE3020098
  • Mutator
  • MadM37
  • MDC018412.103:11863-12662
  • AAAATTAAA
  • GGCTTGTTTTATTAATCRCTCACATTTTGTTGACTACACCCARATACT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAATTAAA  C  G          CR       T       C      -  -----------R     TAAT   T  CACATTTACT   -   ATTAAATTTTTTCTTAAGACACCCCACGTATTTTCCAATACTACCCTCACACCTCACATCTCACACACCCCACAATCATCAACTAATTAATCACACATCAAAACTCTTCATCTCTTTCAAACAAAAGAATAATTCACATTTCAAAGACAAGAAAGATGAATTAAATTGTAGTATAAAATCTCCATCTTGCTGTTTGATTTATACACATCCGTCAAATTTTCTTGAACAATCACGTTGGATTCTAAGAAGCATGATGGACAAATAGTAGGAATGGTTCTTATAAGGTCATGTCTCAATTCCAACCGGCCAAAAAA
         GG TT TTTTATTAAT  CTCACAT TTGTTGA TACACC CA            ATACT    ACA CT          TCT TAA                                                                                                                                                                                                                                                                                                                          
         || || ||||||||||  ||||||| ||||||| |||||| ||            |||||    ||| ||          ||| |||                                                                                                                                                                                                                                                                                                                           
         CC AA AAAATAATTG  GAGTGTA AACAACT ATGTGG GT            TATGA    TGT GA          GAG TTA                                                                                                                                                                                                                                                                                                                          
AAATTAAAA  C  A          TG       C       T      A  AAATTTTTACAT     --TT   T  -----ACATT   A   TACTTTACTGATAAGCTCGGGAGTATCGATGAGAATGAGAGTTAACATCTTGTTTTGGGATTTTTGTGTTTGTGCAACTACTTTTTTATAGAAAACTACTTGCCTTGTTTTTTAGCTCAAAACGAGGAGAAAGTATGCAACCAAAAGTATAAGTTCTTTAATAAATTTATTATCTTATTTTAAAACTGAAAAACGTTTCAAGACGAGATTAACCTTAGGTTCTTTATCCTTCTTTTGACTTCTTACAACATTTTAAAATTCTACATTAATTTAAATTATAAGAACACCGACAAACTACTACTTCTTTAAGTTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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