SE3020101

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_238
  • Malus domestica
  • SE3020101
  • Mutator
  • MadM11
  • MDC000703.490:1084-1247
  • TTGTAATAG
  • TAATAGGGGTGTGCTATCCACACACCTCATTTTACTTCTCACACACTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTG  AT         C                                  -------CTT     TTTATGTTATTTGATCTTC
   TA  AGGGGTGTG TATCCACACACCTCATTTTACTTCTCACACACTT          GATAA                   
   ||  ||||||||| ||||||||||||||||||||||||||||||||||          |||||                   T
   AT  TCCCCACAC ATAGGTGTGTGGGGTAAAATGAAGAGTGTGTGGA          GCTGG                   
ATA  GT         T                                  AAAATTAAAA     CAGCCTAGCCTATTTAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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