SE3020102

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_239
  • Malus domestica
  • SE3020102
  • Mutator
  • MadM8
  • MDC015977.81:12022-12208
  • TTTAATTTA
  • AGGGTAATACTAGGGAGATCAAATTTTTAAACCAAATTTTGTAAATCAAATGATGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAATTT        A          C       T           T      C          GTT    A GATTGAATAATTACTAACGTGTT
        AGGGTAAT CTAGGGAGAT AAATTTT AAACCAAATTT GTAAAT AAATGATGTG   GTTA T                       
        |||||||| |||||||||| ||||||| ||||||||||| |||||| ||||||||||   |||| |                        
        TCCTATTA GATCTCTCTG TTTAAAA TTTGGTTTAAA CGTTTG TTTACTACAC   AGTG G                       
 TTTAATT        C          A       -           -      A          ---    - TTATCTTTTATTCACGCAGTTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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