Plant MITE

SE3020103

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_240
Malus domestica
SE3020103
Mutator
MadM8
MDC000201.401:1864-2040
TAATAAATA
TAGAGTAATGCTAGGGAGACCAAATTTTTAAAACCAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TAATAAA          C       AC    TT   A         ---      A   AATGATGTGGTTGTAGATGATTGGGTTATTA
       TAGAGTAATG TAGGGAG  CAAA  TTT AAACCAAAT   TTGCAA CTA                               
       |||||||||| |||||||  ||||  ||| |||||||||   |||||| |||                               A
       ATCTCATTAC ATCCCTC  GTTT  AAA TTTGGTTTA   CACAGT GGT                               
ATAAATA          A       AA    TT   A         CTA      -   TATTCTTTATTCGTGTAATTAGCTGTGAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020103

TAATAAATAGAGTAATGCTAGGGAGACCAAATTTTTAAAACCAAATTTGCAAACTAAATGATGTGGTTGTAGATGATTGGGTTATTAATTAAGTGTCGATTAATGTGCTTATTTCTTATTGGTGACACATCATTTGGTTTAAAATTTTTGAACTCCCTAACATTACTCTAATAAATA

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