SE3020105

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_242
  • Malus domestica
  • SE3020105
  • Mutator
  • MadM36
  • MDC003668.619:5881-6068
  • CCAAATTTA
  • AAATTTAGAGTAATGCTAGGGAAACTAAGTTTGGAGAYTAAATTTTGAAAACTAAATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
CC      -A           G   A              Y    TT   A    T      YATG     T   GATTGATTTATTACTTAAGTGY
  AAATTT  GAGTAATGCTA GGA ACTAAGTTTGGAGA TAAA  TTG AAAC AAATGA    TAAGT GAT                      
  ||||||  ||||||||||| ||| |||||||||||||| ||||  ||| |||| ||||||    ||||| |||                      T
  TTTAAA  CTCATTACGAT CTT TGATTTAAACCTCT ATTT  AAC TTTG TTTACT    CACAG TGA                      
 A      CC           A   C              G    -T   G    C      ---A     -   TTATGTTTACTCGTGCAAATAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3