SE3020110

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_247
  • Malus domestica
  • SE3020110
  • Mutator
  • MadM10
  • MDC011790.754:1305-1532
  • ATTTATTTT
  • TGGAGGCAAATTTTCTGCCCTCCCACTTCCCGTGCCCTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTATTT        A                               CGTGCCCTCT     T     A               A              --A        ATAGAGATA
        TGGAGGCA ATTTTCTGCCCTCCCACTTCCCGTGCCCTCC          TGTTT GTGTG TTATGGTTAAGCCAC TCAACATTTTATAT   TATTTTTT         
        |||||||| |||||||||||||||||||||||||||||||          ||||| ||||| ||||||||||||||| ||||||||||||||   ||||||||         A
        ACCTCCGT TAAGAGACGGGAGGGTGAAGGGCACGGGAGG          ACAAA CACAC AGTGCCAATTCGGTG AGTTGTAAAATATA   ATAAGAAA         
TTTTATTT        C                               ----------     -     C               C              ATG        AAACAGAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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