SE3020111

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_248
  • Malus domestica
  • SE3020111
  • Mutator
  • MadM40
  • MDC007519.416:2450-2885
  • TTTTATTTT
  • GGCCTAATTGGATTATTAGTCCCTGTGGTGATATGGTAGTTCAAAGATAGCTCATGTGTCAAAAAAAAATTAAGATTTAAGCTCATATGGTGAAGTCGGTTARGATTTATGCYTAAAATTGAAAATATCGTGAATTCTCC

Secondary structure and sequence

TSD    TIR
5'



3'
TTTTATTTT   C           T    CC           T       C           A    -TC            A        C  -ATA         CG    R      T  Y        A    A    GA       -     TTATTAGCATGTAAGCCAAACATTTTAGGCTAAAACAAAATTCTCCRTTAATTGTTAGTACGT
         GGC TAATTGGATTA TAGT  CTGTGGTGATA GGTAGTT AAAGATAGCTC TGTG   AAAAAAAAATTA GATTTAAG TC    TGGTGAAGT  GTTA GATTTA GC TAAAATTG AAAT TCGT  ATTCTCC GTTAA                                                               
         ||| ||||||||||| ||||  ||||||||||| ||||||| ||||||||||| ||||   |||||||||||| |||||||| ||    |||||||||  |||| |||||| || |||||||| |||| ||||  ||||||| |||||                                                                
         CCG ATTAACCTAAT ATCA  GGCACCACTAT CCATCAA TTTCTATCGGG ACAC   TTTTTTTTTAAT CTAAATTC AG    ACTACTTTA  CAAT CTAAAT CG GTTTTAAC TTTA AGCA  TGAGAGG AATTA                                                               
TTTTATTTT   A           T    AA           C       C           A    TAA            C        -  GAAC         KA    C      C  A        A    A    GA       T     ACAATCGTGTATTCCGAGTGTACACTTTGATTTTTCTATTTCAATYRGAGTGTACATTTGGTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End