Plant MITE

SE3050112

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_249
Malus domestica
SE3050112
PIF/harbinger
MadP8
MDC000214.221:9227-9532
TGA
AGGCCTCATTTGATAATGAGGATTGGTTTAGGTAGGACTATTCACTATAATTGAAGGCATTTTAAAGGAAGAAATGAATGACAAATTACTTATTTTGTCCAAGTTGAAGGTTACTCATGAAGAATATTTGTCCCTACTAATC

Secondary structure and sequence

TSD TIR

5'

3'

TG       A       AT            A                   A   A   C       A          A         TA   A      -                            T        AC     CCCA  AAA
  AGGCCTC TTTGATA  GAGGATTGGTTT GGTAGGACTATTCACTATA TTG AGG ATTTTAA GGAAGAAATG ATGACAAAT  CTT TTTTGT CCAAGTTGAAGGTTACTCATGAAGAATA TTGTCCCT  TAATC    CA   
  ||||||| |||||||  |||||||||||| ||||||||||||||||||| ||| ||| ||||||| |||||||||| |||||||||  ||| |||||| |||||||||||||||||||||||||||| ||||||||  |||||    ||    
  TCCGGAG AAACTGT  CTCCTAACCGAA CTATCCTGATAAGTGATAT AAT TCC TAAAATT CCTTCTTTAC TACTGTTTA  GAA AAAACA GGTTCAACTTCCAATGAGTACTTCTTAT AACAGGGA  ATTAG    GT   
AG       C       CT            C                   -   C   A       G          C         AG   G      A                            C        CA     CATA  AAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050112

TGAGGCCTCATTTGATAATGAGGATTGGTTTAGGTAGGACTATTCACTATAATTGAAGGCATTTTAAAGGAAGAAATGAATGACAAATTACTTATTTTGTCCAAGTTGAAGGTTACTCATGAAGAATATTTGTCCCTACTAATCCCCACAAAAAAATGATACGATTAACAGGGACAACTATTCTTCATGAGTAACCTTCAACTTGGAACAAAAGAAGGAATTTGTCATCCATTTCTTCCGTTAAAATACCTCTAATATAGTGAATAGTCCTATCCAAGCCAATCCTCTCTGTCAAACGAGGCCTGA

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