SE3050117

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_254
  • Malus domestica
  • SE3050117
  • PIF/harbinger
  • MadP7
  • MDC021225.118:3264-3502
  • TTT
  • GAGCTCGTTTGGATGTGSTTTTAAAATAACTGAAAGCGCTTTTAGAGAAAATGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTT                 S         A               A A          -----     TTCCAAAAGCACTTGAAGTGCTTTCTGCAAGAAGCACCAGTTATGTGCTTCTT
   GAGCTCGTTTGGATGTG TTTTAAAAT ACTGAAAGCGCTTTT G GAAAATGTTT     GTGGA                                                     
   ||||||||||||||||| ||||||||| ||||||||||||||| | ||||||||||     |||||                                                      
   CTCGAGCAAACCTACAC AAAATTTTA TGGCTTTTGCGAAAA C TTTTTACAAA     TGATT                                                     
TTT                 G         C               C A          AATCT     AGGAATCATTTTTACGTTCATTTAGGATCTTTTCGTGAATTTCACGAAGGACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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