SE3020118

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_255
  • Malus domestica
  • SE3020118
  • Mutator
  • MadM41
  • MDC001034.260:6300-6515
  • CTCAAAGAC
  • GACGGATTTGGATCCTCTCCTGAGCTAATGAAGAGGATCCTCCTGACCAAGTGTTATGGATCGTTGGATTTTTATCCAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCAAA  C                           A           C   C            A                    A   ACAAACAGATAAGTCCTT
      GA GGATTTGGATCCTCTCCTGAGCTAATG AGAGGATCCTC TGA CAAGTGTTATGG TCGTTGGATTTTTATCCAAC GCT                  
      || ||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||| |||                  T
      CT CCTAAACCTAGGAGAGGACTCGATTAC TCTCCTAGGAG ACT GTTCACAATACC GGCAACCTAAAAGTAGGTTG CAA                  
 AGAAA  C                           C           A   A            C                    C   TATTAATAATATTGAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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