SE3020119

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_256
  • Malus domestica
  • SE3020119
  • Mutator
  • MadM11
  • MDC001885.218:4523-4690
  • TATAATATA
  • TATAATATAGGGGTGTGATATCCACACACTCCTTTTTACTTCTCTCACACCCTTTTAATTTTCGGTCGTCGGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
    A            A                   -                  --       CG  C  CG    GGATGAAT
TATA TATAGGGGTGTG TATCCACACACTCCTTTTT ACTTCTCTCACACCCTTT  TAATTTT  GT GT  GATC        
|||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||  |||||||  || ||  ||||         
ATAT ATATCCCCACAC ATAGGTGTGTGGGGAAAAA TGAAGAGAGTGTGGGGAA  ATTAAAG  CA TA  CTAG        
    A            G                   A                  CA       -A  A  AA    AAAGAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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