Plant MITE

SE3020120

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_257
Malus domestica
SE3020120
Mutator
MadM42
MDC012982.217:1147-1566
ATCCCTTTG
GGGAAATTTGGAAAAGTAACCATATTTTAGACCCTATATATAATTATAGCCACTATTTTAGTTTTATGATAATTCTAACCAAAATTT

Secondary structure and sequence

TSD TIR

5'

3'

 ATCCCTTT    AA              C                   T           C            A        C            NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACC   TAAGCACCATTTGCCAATTTTTCATAATATACCCTTAATTTAACAGCAATATGTGAATATCTATATCTACTCTATATCTATATACATACATACATACATACATACATACATACATACATACATATATATATATATATATATATATAGATTAAAAA
         GGGA  TTTGGAAAAGTAAC ATATTTTAGACCCTATATA AATTATAGCCA TATTTTAGTTTT TGATAATT TAACCAAAATTT                                                                                                AGA                                                                                                                                                           
         ||||  |||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| |||||||| ||||||||||||                                                                                                |||                                                                                                                                                            
         CCCT  AAACCTTTTCATTG TATAAAATCTGGGGTATAT TTAATATCGGT GTAAAATCAAAA ACTATTAA ATTGGTTTTGAA                                                                                                CAT                                                                                                                                                           
TTTCCCTAC    AA              A                   C           A            A        T            ---------------------------------------------------------------------------------------------CTA   TTTCATGATTATATGGGAATTACTGTTTTTTTTAGGGGTAATGAGAATTGGTACTTTTTTGTTGTTAATTAACTCTAGAATTTCGTATTTTCTACATCGGAGAACTTATGATGAGCCACGGGGAATGAGAGCTTGGGGAGGTAAAGGATGTGAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020120

ATCCCTTTGGGAAATTTGGAAAAGTAACCATATTTTAGACCCTATATATAATTATAGCCACTATTTTAGTTTTATGATAATTCTAACCAAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACCAGATAAGCACCATTTGCCAATTTTTCATAATATACCCTTAATTTAACAGCAATATGTGAATATCTATATCTACTCTATATCTATATACATACATACATACATACATACATACATACATACATACATATATATATATATATATATATATAGATTAAAAAAGAGTGTAGGAAATGGAGGGGTTCGAGAGTAAGGGGCACCGAGTAGTATTCAAGAGGCTACATCTTTTATGCTTTAAGATCTCAATTAATTGTTGTTTTTTCATGGTTAAGAGTAATGGGGATTTTTTTTGTCATTAAGGGTATATTAGTACTTTTACATCAAGTTTTGGTTATAATTATCAAAAAACTAAAATGATGGCTATAATTCTATATGGGGTCTAAAATATAGTTACTTTTCCAAAAATCCCCATCCCTTT

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